CDS

Accession Number TCMCG006C15102
gbkey CDS
Protein Id XP_022561538.1
Location join(14041692..14041810,14042032..14042179,14042345..14042442,14042685..14042760,14042927..14043046,14043503..14043550,14043653..14043717,14043805..14043890,14043998..14044162,14044367..14044476,14044574..14044616,14045612..14045674,14045747..14045822,14045928..14045986,14046074..14046141,14046230..14046403,14046492..14046701,14046786..14047042,14047122..14047265,14047339..14047396,14047478..14047780,14047854..14048501,14048566..14048799)
Gene LOC106410986
GeneID 106410986
Organism Brassica napus

Protein

Length 1123aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022705817.1
Definition DNA mismatch repair protein MSH1, mitochondrial isoform X2 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA mismatch repair protein MSH1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0000002        [VIEW IN EMBL-EBI]
GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007005        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009408        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009579        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032042        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034357        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0042651        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044436        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCACTGGATTGCCACCAGAAACGCCGTCGTTTCGCTCCCTAGATGGCGTTCCTTCGCCTTCCTCTTCCGCTCGCCATTTCGCACTCACTCTTCCCTCAAACCCTCCCCTCTTCTACTTAATACAAGGTACTCTGAGAGGAGATACTGTTTAGGAGATGGAAAGGCTGTGAAAGGAATCACTACGGCTTCTTCTAAGAAAGTTAAGACCAAGTCTACTGATGTTCTCACTGACAAAGATCTCTCTCATTTGCTCTGGTGGAAGGAGAGATTGCAGACATGTAAGAAACCATCTACTCTTCAACTTATCGAAAGACTTATGTACACCAATCTACTTGGTCTGGACCCCAGCCTGAGGAATGGAAGTCTAAAAGACGGAAACCTCAACTGGGAGATGTTGCAGTTTAAGTCAAGGTTTCCACGAGAAGTTTTGCTCTGCAGAGTGGGAGACTTCTATGAGGCTATTGGGATAGATGCATGTATACTGGTTGAGTATGCTGGTCTAAATCCTTTTGGTGGTCTTCGCTCAGATAGTGCTCCAAAGGCTGGCTGCCCAGTTGTGAATCTTCGACAGACTTTGGATGATCTAACACGCAACGGTTATTCAGTGTGTATTGTGGAGGAAGTTCAGGGGCCAACACCAGCTCGTTCTCGAAAAGGTCGATTCATTTCAGGGCATGCACATCCAGGAAGTCCTTATGTATATGGGCTCGTTGGTGTGGACCACGATCTTGACTTTCCGGAGCCTATGCCGGTCGTTGGGATATCTCGTTCAGCAAGGGGGTATTGCATGATATCTATCTTCGAAACTATGAAAGCATATTCACTAGATGATGGTCTAACAGAAGAAGCTCTGGTCACCAAGCTCCGCACCCGTCGCTGTCATCATCTTTTCTTACATGCATCATTGAGGCACAATGCATCAGGGACATGCCGGTGGGGAGAGTTTGGGGAAGGAGGTTTACTCTGGGGAGAGTGTAGTGGGAGGAATTTTGAATGGTTTGAAGGAGATACTCTTTCCGAGCTCTTATTAAAGGTCAAAGATGTTTATGGTCTTGATGATGAAGTTTCCTTTAGAAATGTCAATGTACCTTTAGAAAACCGGCCACGTCCTTTGCATCTTGGAACGGCTACACAAATTGGTGCCTTACCTACTGAAGGAATACCTTGTTTGTTGAAGGTGCTACTTCCATCTACGTGCAGTGGCCTGCCTTCTTTGTATGTCCGGGATCTTCTTCTAAACCCTCCTGCTTATGATATTGCTCTGAAAATCCAAGAAACGTGCAAGCTCATGAGCACAATAACATGCTCAGTTCCGGAGTTTACCTGTGTTTCATCTGCTAAGCTTGTGAAGCTTCTTGAACAGCGGGAAGCCAACTACATTGAGTTCTGCCGGATAAAAAATGTGCTTGATGAAGTATTACACATGCACAGACATCCTGAGCTTGTGGAAATACTGAAGTTATTGATGGAACCTACTTGGGTGGCTACTGGTTTGAAGATTGACTTTGAAACTTTTGTCAATGAATGTCATTGGGCTTCTGATTCAATTGGTGAAATGATCTCATTAGATGACGATGAAAGTCATCAGAACGTTAGTAAATGTGCTAATATCCCGAACGAGTTCTTTTACGATATGGAGTCTTCATGGCGTGGTCGCGTTAAGGGAATCCATATAGAGGAAGAAATCACACAAGTGGCCAAATCGGCAGAGGCTTTATCTTTAGCGGTAACTGAAGATTTTCACCCTATTATATCAAGAATCAAGGCCATGGCTGCATCACTTGGTGGCTCAAAGGGAGAAATTGTGTATGCAAAAGAACATGAGTCTGTCTGGTTCAAAGGGAAACGGTTTACCCCATCTGTGTGGGGTGGTACTGCAGGAGAAGAACAAATCAAACAGCTGAAGCCTGCTTTTGACTCGAAAGGGAAAAAGGTTGGAGAAGAATGGTTTACGAGTCAAAAGGTGGAAGCTGCTTTAGTCAGATATCATGAAGCTACTGAGAATGCAAATGCCCGGGTGTTGGAGCTGTTGAGGGAATTATCTACTAAACTGCAAACAAAAATAAACGTTCTTGTCTTTGCATCTATGCTTCTCGTCATTGCAAAAGCTTTATTTTCTCATGCTTGTGAAGGGAGAAGACGAAAATGGGTTTTCCCAACTCTTGTTGGATTCAGTACAGATGAGGCCGCAAATCCATTAGATGGTGGTGCCACTCGAATGAAGCTGACTGGGCTATCACCTTATTGGTTTGATGTAGCTTCTGGAACTGCTGTTCACAATACGGTCGACATGCAATCACTGTTTCTTCTAACTGGACCTAATGGTGGTGGTAAATCGAGTTTGCTCAGATCGATATGCGCAGCTGCTTTGCTTGGAATCTGTGGTTTTATGGTTCCAGCTGAATCAGCTTATATCCCTCACTTCGATTCCATCATGCTTCATATGAAATCTTATGACAGTCCTGTAGATGGGAAGAGTTCTTTTCAGGTGGAAATGTCGGAGATACGGTCTATTGTAAGCCAGGCTACTTCAAGAAGCCTAGTGCTTATAGATGAGATCTGCAGAGGGACAGAGACAGCTAAAGGCACCTGTATTGCTGGTAGTGTGATCGAGAATCTTGACGCAAGTGGTTGCTTGGGTATTGTTTCTACACATCTCCATGGAATCTTCGATTTGCCTCTTACGGCCAAAAACGTCACGTATAAAGCAATGGGAGCACAGAATGTGGAAGGGCAAACAAAACCAACATGGAAACTGACAGATGGAGTTTGCAGAGAGAGTCTTGCTTTTGAAACAGCTAAGAGAGAAGGTGTTCCGGAGACAATTATCCAAAGAGCCGAAGCTCTGTACATCTCCGTTTATGCCAAAGACGCATCGTTTGGGGTTGTCAGGCCAAACAAAACGGAGACTTCATCGAACAGTGGCCGCGAAATCAGCAAACCAGTCAGCTCTGAGAGAAGCTTAGAGAAGGACTTGGCAAAAGCTATCCTTAAGATTTGTGGGATAAAGATGAATGAGCCTGTAGGTTTAGAATGTCTTTCAATAGGTGCTCGAGAGCTTCCACCTCCATCTACAGTTGGTTCATCATGCGTGTATGTGATGAAGAGACCAGATAAGAGATTGTACATTGGACAGACGGATGATCTTGAAGGAAGAATACGTGCGCATAGGGCAAAGGAAGGACTGCAAGGGTCAAGTTTCCTATACCTTGTGGTACAAGGTAAGAGTATGGCTTGTCAGCTAGAGACCCTTTTGATTAACCAGCTCCATGAGCAAGGCTATTCTCTAGCTAACTTAGCAGATGGAAAGCACCGCAATTTTGGGACGTCATCAAGCTTGACTGCGTCAGATGTAGTCAGTATCTCCTAG
Protein:  
MHWIATRNAVVSLPRWRSFAFLFRSPFRTHSSLKPSPLLLNTRYSERRYCLGDGKAVKGITTASSKKVKTKSTDVLTDKDLSHLLWWKERLQTCKKPSTLQLIERLMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGLRSDSAPKAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISGHAHPGSPYVYGLVGVDHDLDFPEPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEALVTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWGECSGRNFEWFEGDTLSELLLKVKDVYGLDDEVSFRNVNVPLENRPRPLHLGTATQIGALPTEGIPCLLKVLLPSTCSGLPSLYVRDLLLNPPAYDIALKIQETCKLMSTITCSVPEFTCVSSAKLVKLLEQREANYIEFCRIKNVLDEVLHMHRHPELVEILKLLMEPTWVATGLKIDFETFVNECHWASDSIGEMISLDDDESHQNVSKCANIPNEFFYDMESSWRGRVKGIHIEEEITQVAKSAEALSLAVTEDFHPIISRIKAMAASLGGSKGEIVYAKEHESVWFKGKRFTPSVWGGTAGEEQIKQLKPAFDSKGKKVGEEWFTSQKVEAALVRYHEATENANARVLELLRELSTKLQTKINVLVFASMLLVIAKALFSHACEGRRRKWVFPTLVGFSTDEAANPLDGGATRMKLTGLSPYWFDVASGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESAYIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVIENLDASGCLGIVSTHLHGIFDLPLTAKNVTYKAMGAQNVEGQTKPTWKLTDGVCRESLAFETAKREGVPETIIQRAEALYISVYAKDASFGVVRPNKTETSSNSGREISKPVSSERSLEKDLAKAILKICGIKMNEPVGLECLSIGARELPPPSTVGSSCVYVMKRPDKRLYIGQTDDLEGRIRAHRAKEGLQGSSFLYLVVQGKSMACQLETLLINQLHEQGYSLANLADGKHRNFGTSSSLTASDVVSIS